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#!/usr/bin/env python
"""
Installation script for dit.
"""
import ast
import re
import sys
import warnings
from setuptools import Extension, find_packages, setup
from distutils.command import install_data
_version_re = re.compile(r'__version__\s+=\s+(.*)')
NAME = "dit"
AUTHOR = "Humans"
EMAIL = "admin@dit.io"
URL = "http://dit.io"
with open('dit/__init__.py', 'rb') as f:
VERSION = str(ast.literal_eval(_version_re.search(
f.read().decode('utf-8')).group(1)))
DESCRIPTION = "Python package for information theory."
class my_install_data(install_data.install_data):
# A custom install_data command, which will install it's files
# into the standard directories (normally lib/site-packages).
def finalize_options(self):
if self.install_dir is None:
installobj = self.distribution.get_command_obj('install')
self.install_dir = installobj.install_lib
print('Installing data files to {0}'.format(self.install_dir))
install_data.install_data.finalize_options(self)
def has_cython():
"""Returns True if Cython is found on the system."""
try:
import Cython # noqa: F401
return True
except ImportError:
return False
def check_opt(name):
x = eval('has_{0}()'.format(name.lower()))
msg = "%(name)s not found. %(name)s extensions will not be built."
if not x:
warnings.warn(msg % {'name': name})
return x
def hack_distutils(debug=False, fast_link=True):
# hack distutils.sysconfig to eliminate debug flags
# stolen from mpi4py
def remove_prefixes(optlist, bad_prefixes):
for bad_prefix in bad_prefixes:
for i, flag in enumerate(optlist):
if flag.startswith(bad_prefix):
optlist.pop(i)
break
return optlist
import sys
if not sys.platform.lower().startswith("win"):
from distutils import sysconfig
cvars = sysconfig.get_config_vars()
cflags = cvars.get('OPT')
if cflags:
cflags = remove_prefixes(cflags.split(),
['-g', '-O', '-Wstrict-prototypes', '-DNDEBUG'])
if debug:
cflags.append("-g")
else:
cflags.append("-O3")
cflags.append("-DNDEBUG")
cvars['OPT'] = str.join(' ', cflags)
cvars["CFLAGS"] = cvars["BASECFLAGS"] + " " + cvars["OPT"]
if fast_link:
for varname in ["LDSHARED", "BLDSHARED"]:
ldsharedflags = cvars.get(varname)
if ldsharedflags:
ldsharedflags = remove_prefixes(ldsharedflags.split(),
['-Wl,-O'])
cvars[varname] = str.join(' ', ldsharedflags)
def main():
## Probably, we don't need this anymore?
hack_distutils()
# Handle optional extensions.
opt = {}
for name, option in [('Cython', 'nocython')]:
lname = name.lower()
# Determine if the Python module exists
opt[lname] = check_opt(name)
if not opt[lname]:
continue
else:
# Disable installation of extensions, if user requested.
try:
idx = sys.argv.index("--{0}".format(option))
except ValueError:
pass
else:
opt[lname] = False
del sys.argv[idx]
cmdclass = {'install_data': my_install_data}
cython_modules = []
if opt['cython']:
import Cython.Distutils
try:
import numpy as np
except ImportError:
msg = "Please install NumPy first."
print(msg)
raise
cmdclass['build_ext'] = Cython.Distutils.build_ext
close = Extension(
"dit.math._close",
["dit/math/_close.pyx"]
)
pycounts = Extension(
"dit.inference.pycounts",
["dit/inference/pycounts.pyx", "dit/inference/counts.c"],
include_dirs=[np.get_include()],
libraries=['m'],
extra_compile_args=['-std=c99'],
)
samplediscrete = Extension(
"dit.math._samplediscrete",
["dit/math/_samplediscrete.pyx"],
include_dirs=[np.get_include()]
)
# Active Cython modules
cython_modules = [
close,
pycounts,
samplediscrete,
]
other_modules = []
ext_modules = cython_modules + \
other_modules
data_files = [
"dit/inference/counts.h",
]
with open('requirements.txt') as reqs:
install_requires = reqs.read().splitlines()
python_requires = "!=3.0.*, !=3.1.*, !=3.2.*, <4"
packages = find_packages(exclude=['site', 'examples', 'docs', '*tests*'])
# Tests
# This includes for bdist only. sdist uses MANIFEST.in
package_data = dict(zip(packages, [['tests/*.py']] * len(packages)))
setup(
name=NAME,
version=VERSION,
url=URL,
python_requires=python_requires,
packages=packages,
package_data=package_data,
provides=["dit"],
install_requires=install_requires,
ext_modules=ext_modules,
cmdclass=cmdclass,
data_files=data_files,
include_package_data=True,
author=AUTHOR,
author_email=EMAIL,
description=DESCRIPTION,
long_description=open("README.rst").read(),
license="BSD",
classifiers=[
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Programming Language :: Python :: 3.3",
"Programming Language :: Python :: 3.4",
"Programming Language :: Python :: 3.5",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Topic :: Scientific/Engineering",
"Topic :: Scientific/Engineering :: Mathematics",
"Topic :: Scientific/Engineering :: Physics",
],
)
if __name__ == '__main__':
if sys.argv[-1] == 'setup.py':
print("To install, run 'python setup.py install'\n")
v = sys.version_info[:2]
if v < (3, 3):
msg = "dit requires Python version >= 3.4"
print(msg.format(v))
sys.exit(-1)
main()
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