Package: targetSeqView
Title: View alignments over candidate structural variant loci
Version: 0.99.2
Date: 2014-08-23
Author: Eitan Halper-Stromberg
Maintainer: Eitan Halper-Stromberg <Eitan177@gmail.com>
Description: View putative alignments for loci involved in structural rearrangements
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 2.14), foreach, Rsamtools, GenomicRanges,
        Biostrings,IRanges, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
        ggplot2, doMC, grid
Ehhances: doMC
Collate: targetSeqView_functions.R alignQuick.R alignViewFull.R
        getErrorRate.R ViewAndScoreFull.R doQuickScore.R quickScore.R quickSplits.R formatPlot.R
        methods.R