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watson53/ggcor

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houyun 提交于 2020-07-21 22:45 . dist method for get_order
# Generated by roxygen2: do not edit by hand
S3method("&",gg)
S3method("*",gg)
S3method(as.igraph,cor_network)
S3method(as.igraph,cor_tbl)
S3method(as.igraph,corr.test)
S3method(as.igraph,correlate)
S3method(as.igraph,mantel_tbl)
S3method(as.igraph,pro_tbl)
S3method(as.igraph,rcorr)
S3method(as_cor_network,cor_tbl)
S3method(as_cor_network,corr.test)
S3method(as_cor_network,correlate)
S3method(as_cor_network,default)
S3method(as_cor_network,igraph)
S3method(as_cor_network,mantel_tbl)
S3method(as_cor_network,pro_tbl)
S3method(as_cor_network,rcorr)
S3method(as_cor_network,tbl_graph)
S3method(as_cor_tbl,corr.test)
S3method(as_cor_tbl,correlate)
S3method(as_cor_tbl,data.frame)
S3method(as_cor_tbl,default)
S3method(as_cor_tbl,mantel_tbl)
S3method(as_cor_tbl,matrix)
S3method(as_cor_tbl,pro_tbl)
S3method(as_cor_tbl,rcorr)
S3method(as_tbl_graph,cor_network)
S3method(as_tbl_graph,cor_tbl)
S3method(as_tbl_graph,corr.test)
S3method(as_tbl_graph,correlate)
S3method(as_tbl_graph,mantel_tbl)
S3method(as_tbl_graph,pro_tbl)
S3method(as_tbl_graph,rcorr)
S3method(as_tibble,cor_tbl)
S3method(display_cor,cor_tbl)
S3method(display_cor,corr.test)
S3method(display_cor,correlate)
S3method(display_cor,data.frame)
S3method(display_cor,mantel_tbl)
S3method(display_cor,matrix)
S3method(display_cor,pro_tbl)
S3method(display_cor,rcorr)
S3method(export_cor_network,cor_network)
S3method(export_cor_network,cor_tbl)
S3method(export_cor_network,corr.test)
S3method(export_cor_network,correlate)
S3method(export_cor_network,mantel_tbl)
S3method(export_cor_network,pro_tbl)
S3method(export_cor_network,rcorr)
S3method(filter,cor_network)
S3method(get_order,character)
S3method(get_order,cor_tbl)
S3method(get_order,dendrogram)
S3method(get_order,dist)
S3method(get_order,ggtree)
S3method(get_order,hclust)
S3method(get_order,numeric)
S3method(get_order,quickcor)
S3method(ggplot_add,anno_bar)
S3method(ggplot_add,anno_bar2)
S3method(ggplot_add,anno_boxplot)
S3method(ggplot_add,anno_col_custom)
S3method(ggplot_add,anno_col_heat)
S3method(ggplot_add,anno_col_tree)
S3method(ggplot_add,anno_hc_bar)
S3method(ggplot_add,anno_hc_rect)
S3method(ggplot_add,anno_link)
S3method(ggplot_add,anno_network)
S3method(ggplot_add,anno_row_custom)
S3method(ggplot_add,anno_row_heat)
S3method(ggplot_add,anno_row_tree)
S3method(ggplot_add,expand_axis)
S3method(ggplot_add,geom_diag_label)
S3method(ggplot_add,geom_mark2)
S3method(ggplot_add,geom_number2)
S3method(ggplot_add,geom_panel_grid)
S3method(ggplot_add,p_xaxis)
S3method(ggplot_add,p_yaxis)
S3method(ggplot_build,dplot)
S3method(group_by,cor_tbl)
S3method(mutate,cor_network)
S3method(mutate,cor_tbl)
S3method(plot,calc_relimp)
S3method(plot,random_forest)
S3method(print,calc_relimp)
S3method(print,cor_network)
S3method(print,correlate)
S3method(print,dplot)
S3method(print,quickcor)
S3method(print,random_forest)
S3method(ungroup,grouped_cor_tbl)
export("%>%")
export(GeomCircle2)
export(GeomConfbox)
export(GeomCross)
export(GeomCurve2)
export(GeomEllipse2)
export(GeomMark)
export(GeomNumber)
export(GeomRing)
export(GeomSegment2)
export(GeomShade)
export(GeomSquare)
export(GeomStar)
export(PositionShiftDodge)
export(PositionShiftDodge2)
export(PositionShiftFill)
export(PositionShiftIdentity)
export(PositionShiftStack)
export(add_diag_label)
export(add_grid)
export(add_link)
export(aes)
export(anno_bar)
export(anno_bar2)
export(anno_boxplot)
export(anno_col_custom)
export(anno_col_heat)
export(anno_col_tree)
export(anno_hc_bar)
export(anno_hc_rect)
export(anno_link)
export(anno_link_label)
export(anno_network)
export(anno_row_custom)
export(anno_row_heat)
export(anno_row_tree)
export(anno_tree)
export(as.igraph)
export(as_cor_network)
export(as_cor_tbl)
export(as_dplot)
export(as_tbl_graph)
export(brown_blue)
export(brown_purple)
export(calc_relimp)
export(cor_network)
export(cor_tbl)
export(correlate)
export(display_cor)
export(dudi_pca)
export(empty_plot)
export(expand_axis)
export(export_cor_network)
export(fast_correlate)
export(fast_correlate2)
export(filter)
export(format_cor)
export(fortify_cor)
export(fortify_mantel)
export(fortify_procrutes)
export(gcor_tbl)
export(geom_circle2)
export(geom_color)
export(geom_colour)
export(geom_confbox)
export(geom_cross)
export(geom_curve2)
export(geom_diag_label)
export(geom_ellipse2)
export(geom_mark)
export(geom_mark2)
export(geom_number)
export(geom_number2)
export(geom_panel_grid)
export(geom_pie2)
export(geom_ring)
export(geom_segment2)
export(geom_shade)
export(geom_square)
export(geom_star)
export(get_col_name)
export(get_data)
export(get_diag_data)
export(get_diag_tri)
export(get_lower_data)
export(get_order)
export(get_row_name)
export(get_show_diag)
export(get_type)
export(get_upper_data)
export(ggcor)
export(ggplot_add)
export(is_cor_tbl)
export(is_dplot)
export(is_gcor_tbl)
export(is_quickcor)
export(is_symmet)
export(liner_trans)
export(link_colour_pal)
export(link_tbl)
export(mantel_test)
export(matrix_order)
export(mono_mds)
export(mutate)
export(ncols)
export(nrows)
export(pink_green)
export(position_shift_dodge)
export(position_shift_dodge2)
export(position_shift_fill)
export(position_shift_identity)
export(position_shift_stack)
export(procrutes_test)
export(purple_green)
export(qheatmap)
export(quickcor)
export(rand_correlate)
export(rand_dataset)
export(random_forest)
export(red_blue)
export(red_grey)
export(red_yellow_blue)
export(red_yellow_green)
export(remove_all_axis)
export(remove_axis)
export(remove_x_axis)
export(remove_y_axis)
export(reset_scale)
export(scale_color_gradient2n)
export(scale_colour_gradient2n)
export(scale_fill_gradient2n)
export(scale_radius_area)
export(set_p_xaxis)
export(set_p_yaxis)
export(set_scale)
export(spectral)
export(theme_cor)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(ggnewscale,new_scale)
importFrom(ggplot2,Geom)
importFrom(ggplot2,GeomCurve)
importFrom(ggplot2,GeomPoint)
importFrom(ggplot2,GeomPolygon)
importFrom(ggplot2,GeomRect)
importFrom(ggplot2,GeomSegment)
importFrom(ggplot2,GeomText)
importFrom(ggplot2,Position)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,continuous_scale)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,coord_polar)
importFrom(ggplot2,draw_key_blank)
importFrom(ggplot2,draw_key_path)
importFrom(ggplot2,draw_key_polygon)
importFrom(ggplot2,draw_key_text)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_blank)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplot_add)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggproto)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_colourbar)
importFrom(ggplot2,guides)
importFrom(ggplot2,is.theme)
importFrom(ggplot2,layer)
importFrom(ggplot2,position_nudge)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_viridis_c)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,scale_y_reverse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_void)
importFrom(graphics,plot)
importFrom(grid,gTree)
importFrom(grid,grobTree)
importFrom(igraph,as.igraph)
importFrom(igraph,as_data_frame)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,is.directed)
importFrom(magrittr,"%>%")
importFrom(patchwork,plot_layout)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_dfr)
importFrom(purrr,pmap)
importFrom(purrr,pmap_dfr)
importFrom(purrr,walk)
importFrom(purrr,walk2)
importFrom(rlang,"!!")
importFrom(rlang,enquo)
importFrom(rlang,eval_tidy)
importFrom(rlang,quo_is_null)
importFrom(rlang,set_names)
importFrom(rlang,sym)
importFrom(scales,gradient_n_pal)
importFrom(scales,rescale_pal)
importFrom(scales,trans_new)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,as.hclust)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,gaussian)
importFrom(stats,glm)
importFrom(stats,hclust)
importFrom(stats,is.leaf)
importFrom(stats,na.exclude)
importFrom(stats,nobs)
importFrom(stats,order.dendrogram)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidygraph,as_tbl_graph)
importFrom(tidygraph,tbl_graph)
importFrom(utils,modifyList)
importFrom(utils,write.table)
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https://gitee.com/watson53/ggcor.git
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watson53
ggcor
ggcor
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