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#!/bin/sh
# [description]
# Prepare a source distribution of the R package
# to be submitted to CRAN.
#
# [arguments]
#
# --r-executable Customize the R executable used by `R CMD build`.
# Useful if building the R package in an environment with
# non-standard builds of R, such as those provided in
# https://github.com/wch/r-debug.
#
# --no-build-vignettes Pass this flag to skip creating vignettes.
# You might want to do this to avoid installing
# vignette-only dependencies, or to avoid
# portability issues.
#
# [usage]
#
# # default usage
# sh build-cran-package.sh
#
# # custom R build
# sh build-cran-package.sh --r-executable=RDvalgrind
#
# # skip vignette building
# sh build-cran-package.sh --no-build-vignettes
set -e
# Default values of arguments
BUILD_VIGNETTES=true
LGB_R_EXECUTABLE=R
while [ $# -gt 0 ]; do
case "$1" in
--r-executable=*)
LGB_R_EXECUTABLE="${1#*=}"
;;
--no-build-vignettes*)
BUILD_VIGNETTES=false
;;
*)
echo "invalid argument '${1}'"
exit -1
;;
esac
shift
done
echo "Building lightgbm with R executable: ${LGB_R_EXECUTABLE}"
ORIG_WD="$(pwd)"
TEMP_R_DIR="$(pwd)/lightgbm_r"
if test -d "${TEMP_R_DIR}"; then
rm -r "${TEMP_R_DIR}"
fi
mkdir -p "${TEMP_R_DIR}"
CURRENT_DATE=$(date +'%Y-%m-%d')
# R packages cannot have versions like 3.0.0rc1, but
# 3.0.0-1 is acceptable
LGB_VERSION=$(cat VERSION.txt | sed "s/rc/-/g")
# move relevant files
cp -R R-package/* "${TEMP_R_DIR}"
cp -R include "${TEMP_R_DIR}/src/"
cp -R src/* "${TEMP_R_DIR}/src/"
if ${BUILD_VIGNETTES} ; then
cp docs/logo/LightGBM_logo_black_text.svg "${TEMP_R_DIR}/vignettes/"
fi
cp \
external_libs/fast_double_parser/include/fast_double_parser.h \
"${TEMP_R_DIR}/src/include/LightGBM"
mkdir -p "${TEMP_R_DIR}/src/include/LightGBM/fmt"
cp \
external_libs/fmt/include/fmt/*.h \
"${TEMP_R_DIR}/src/include/LightGBM/fmt/"
# including only specific files from Eigen, to keep the R package
# small and avoid redistributing code with licenses incompatible with
# LightGBM's license
EIGEN_R_DIR="${TEMP_R_DIR}/src/include/Eigen"
mkdir -p "${EIGEN_R_DIR}"
modules="Cholesky Core Dense Eigenvalues Geometry Householder Jacobi LU QR SVD"
for eigen_module in ${modules}; do
cp external_libs/eigen/Eigen/${eigen_module} "${EIGEN_R_DIR}/${eigen_module}"
if [ ${eigen_module} != "Dense" ]; then
mkdir -p "${EIGEN_R_DIR}/src/${eigen_module}/"
cp -R external_libs/eigen/Eigen/src/${eigen_module}/* "${EIGEN_R_DIR}/src/${eigen_module}/"
fi
done
mkdir -p "${EIGEN_R_DIR}/src/misc"
cp -R external_libs/eigen/Eigen/src/misc/* "${EIGEN_R_DIR}/src/misc/"
mkdir -p "${EIGEN_R_DIR}/src/plugins"
cp -R external_libs/eigen/Eigen/src/plugins/* "${EIGEN_R_DIR}/src/plugins/"
cd "${TEMP_R_DIR}"
# Remove files not needed for CRAN
echo "Removing files not needed for CRAN"
rm src/install.libs.R
rm -r inst/
rm -r pkgdown/
rm cran-comments.md
rm AUTOCONF_UBUNTU_VERSION
rm recreate-configure.sh
# files only used by the lightgbm CLI aren't needed for
# the R package
rm src/application/application.cpp
rm src/include/LightGBM/application.h
rm src/main.cpp
# configure.ac and DESCRIPTION have placeholders for version
# and date so they don't have to be updated manually
sed -i.bak -e "s/~~VERSION~~/${LGB_VERSION}/" configure.ac
sed -i.bak -e "s/~~VERSION~~/${LGB_VERSION}/" DESCRIPTION
sed -i.bak -e "s/~~DATE~~/${CURRENT_DATE}/" DESCRIPTION
# Remove 'region', 'endregion', and 'warning' pragmas.
# This won't change the correctness of the code. CRAN does
# not allow you to use compiler flag '-Wno-unknown-pragmas' or
# pragmas that suppress warnings.
echo "Removing unknown pragmas in headers"
for file in $(find . -name '*.h' -o -name '*.hpp' -o -name '*.cpp'); do
sed \
-i.bak \
-e 's/^.*#pragma clang diagnostic.*$//' \
-e 's/^.*#pragma diag_suppress.*$//' \
-e 's/^.*#pragma GCC diagnostic.*$//' \
-e 's/^.*#pragma region.*$//' \
-e 's/^.*#pragma endregion.*$//' \
-e 's/^.*#pragma warning.*$//' \
"${file}"
done
find . -name '*.h.bak' -o -name '*.hpp.bak' -o -name '*.cpp.bak' -exec rm {} \;
sed \
-i.bak \
-e 's/\.\..*fmt\/format\.h/LightGBM\/fmt\/format\.h/' \
src/include/LightGBM/utils/common.h
sed \
-i.bak \
-e 's/\.\..*fast_double_parser\.h/LightGBM\/fast_double_parser\.h/' \
src/include/LightGBM/utils/common.h
# When building an R package with 'configure', it seems
# you're guaranteed to get a shared library called
# <packagename>.so/dll. The package source code expects
# 'lib_lightgbm.so', not 'lightgbm.so', to comply with the way
# this project has historically handled installation
echo "Changing lib_lightgbm to lightgbm"
for file in R/*.R; do
sed \
-i.bak \
-e 's/lib_lightgbm/lightgbm/' \
"${file}"
done
sed \
-i.bak \
-e 's/lib_lightgbm/lightgbm/' \
NAMESPACE
# 'processx' is listed as a 'Suggests' dependency in DESCRIPTION
# because it is used in install.libs.R, a file that is not
# included in the CRAN distribution of the package
sed \
-i.bak \
'/processx/d' \
DESCRIPTION
echo "Cleaning sed backup files"
rm R/*.R.bak
rm NAMESPACE.bak
cd "${ORIG_WD}"
if ${BUILD_VIGNETTES} ; then
"${LGB_R_EXECUTABLE}" CMD build \
--keep-empty-dirs \
lightgbm_r
echo "removing object files created by vignettes"
rm -rf ./_tmp
mkdir _tmp
TARBALL_NAME="lightgbm_${LGB_VERSION}.tar.gz"
mv "${TARBALL_NAME}" _tmp/
echo "untarring ${TARBALL_NAME}"
cd _tmp
tar -xf "${TARBALL_NAME}" > /dev/null 2>&1
rm -f "${TARBALL_NAME}"
echo "done untarring ${TARBALL_NAME}"
# Object files are left behind from compiling the library to generate vignettes.
# Approaches like using tar --exclude=*.so to exclude them are not portable
# (for example, don't work with some versions of tar on Windows).
#
# Removing them manually here removes the need to use tar --exclude.
#
# For background, see https://github.com/microsoft/LightGBM/pull/3946#pullrequestreview-799415812.
rm -f ./lightgbm/src/*.o
rm -f ./lightgbm/src/boosting/*.o
rm -f ./lightgbm/src/io/*.o
rm -f ./lightgbm/src/metric/*.o
rm -f ./lightgbm/src/network/*.o
rm -f ./lightgbm/src/objective/*.o
rm -f ./lightgbm/src/treelearner/*.o
echo "re-tarring ${TARBALL_NAME}"
tar \
-cz \
-f "${TARBALL_NAME}" \
lightgbm \
> /dev/null 2>&1
mv "${TARBALL_NAME}" ../
cd ..
echo "Done creating ${TARBALL_NAME}"
rm -rf ./_tmp
else
"${LGB_R_EXECUTABLE}" CMD build \
--keep-empty-dirs \
--no-build-vignettes \
lightgbm_r
fi
echo "Done building R package"
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