#!/bin/bash
# This file is only used by the Vagrantfile to configure installations
# If one would like additional software installed, one can edit this file
# (either to install from package manager or source)

# USER=efdc

# HOME=/home/${USER} 
apt-get install sudo
echo "Provisioning virtual machine..."
sudo apt-get update

echo "Installing required packages"
    sudo apt-get update -y ; \
    sudo apt-get install automake apt-utils gcc gfortran openssh-server wget  -y ; \
    sudo apt-get install git make m4 zlib1g-dev -y ; \
    sudo apt-get install libopenmpi-dev openmpi-bin libhdf5-openmpi-dev openmpi-common -y ; \
    sudo apt-get install libnetcdf-dev libblas-dev liblapack-dev -y ; \
    sudo apt-get install libfreetype6-dev pkg-config libpng-dev -y ; \
    sudo apt-get install libxml2-dev -y ; \
    sudo apt-get install libbsd-dev -y ; \
    sudo apt install build-essential -y ; \
    sudo apt install g++ -y ; \
    export PATH=$PATH:/usr/bin/ ;
# 修改文件权限
chmod -R 700 ./Dependence

# 切换到依赖目录
cd ./Dependence || exit
# Add NetCDF & OpenBlas libraries
# 1) We need HDF
#Required for NetCDF integration; source is supported at http://www.hdfgroup.org/ftp/HDF5/current/src

HDF_VERSION="1.12.0"
# Download build and install HDF5
    cd  ./hdf5-gcc || exit;  \
    tar -xvf hdf5-${HDF_VERSION}.tar.gz; \
    cd hdf5-${HDF_VERSION}; \
    ./configure --enable-shared --enable-hl --prefix=/usr/local/hdf5 \
    make;  \
    sudo make install; \
    cd ../;

# 2)
#Build netcdf 
# First we need to build NetCDF C version 
# (http://www.unidata.ucar.edu/software/netcdf/docs/getting_and_building_netcdf.html)
# Download and install netcdf C

   NCD_VERSION="4.8.1"
   tar -xvf netcdf-c-${NCD_VERSION}.tar.gz; \
   cd netcdf-c-${NCD_VERSION} || exit;  \
   ./configure --prefix=/usr/local/netcdf CC=gcc LDFLAGS="-L/usr/local/hdf5/lib -lbsd" CFLAGS="-I/usr/local/hdf5/include" --disable-dap \
   make ; \
   sudo make install; \
   # shellcheck disable=SC2103
   cd .. ; \

# 3) Build NetCDF fortran version
# (http://www.unidata.ucar.edu/software/netcdf/docs/building_netcdf_fortran.html)
# Download and install NetCDF fortran
     NCF_VERSION="4.5.4"
     tar -xvf netcdf-fortran-${NCF_VERSION}.tar.gz;
     cd netcdf-fortran-${NCF_VERSION} || exit;
     ./configure --prefix=/usr/local/netcdf --disable-fortran-type-check CC=gcc FC=gfortran LDFLAGS="$(nc-config --libs)" CFLAGS="$(nc-config --cflags)"
     make ;  
     sudo make install; 
     cd ../../ ;

## Add netcdf path to vagrant machine 
# shellcheck disable=SC2129
echo "export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/netcdf/lib" >> ~/.bashrc
echo "export PATH=$PATH:/usr/local/netcdf/bin" >> ~/.bashrc

export LDFLAGS="-L/usr/local/netcdf/lib"
export CFLAGS="-I/usr/local/netcdf/include"
export LIBS="-lnetcdf"
# shellcheck disable=SC1090
source ~/.bashrc
# Update any python requirements
make
make install

ln -s /root/opt/efdc-mpi/Src/EFDC /usr/bin/EFDC