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master

ts_realign_pileups

ts_force_active

tws_BlockCompressedIntervalStreams

wdl_loc_opt

mmt_add_gsutil_m_IG

cn_read_bundle

tb_recalibrate_gq

mmt_CVIF_memory

ah_var_store

ms_add_labels_to_BQ

mw_gatk_sv_v2

tl_fix_gnarly_as_qual_by_depth

ldg_DRAGENreblocking_noOverlaps

ah_microbial_pruning

ldg_catchReblockPLerror

jts_refdiff

ts_variational_contam_model

ah_je_microbial

db_m3_training_mode

4.2.0.0

4.1.9.0

4.1.8.1

4.1.8.0

4.1.7.0

4.1.6.0

4.1.5.0

4.1.4.1

4.1.4.0

4.1.3.0

4.1.2.0

4.1.1.0

4.1.0.0

4.0.12.0

4.0.11.0

4.0.10.1

4.0.10.0

4.0.9.0

4.0.8.1

4.0.8.0

gatk
/
.gitattributes

#These are specifically excluded because they are symlinks that aren't handled well by lfs
src/test/resources/large/funcotator/funcotator_dataSources/achilles/hg38 -filter=lfs -diff=lfs -merge=lfs -text
src/test/resources/large/funcotator/funcotator_dataSources/cancer_gene_census/hg38 -filter=lfs -diff=lfs -merge=lfs -text
src/test/resources/large/funcotator/funcotator_dataSources/dna_repair_genes/hg38 -filter=lfs -diff=lfs -merge=lfs -text
src/test/resources/large/funcotator/funcotator_dataSources/familial/hg38 -filter=lfs -diff=lfs -merge=lfs -text
src/test/resources/large/funcotator/funcotator_dataSources/hgnc/hg38 -filter=lfs -diff=lfs -merge=lfs -text
src/test/resources/large/funcotator/funcotator_dataSources/simple_uniprot/hg38 -filter=lfs -diff=lfs -merge=lfs -text

#Otherwise, track everything in large
src/test/resources/large/** filter=lfs diff=lfs merge=lfs -text
src/main/resources/large/** filter=lfs diff=lfs merge=lfs -text