#################
## Eclipse
#################

tools/Installer/bootLoader/Resources/
COVID-19/

src/runtime/R-sharp/App
/R-sharp/App

src/biodeep/

.nuget/

*.pydevproject
.project
.metadata
bin/
tmp/
*.tmp
*.bak
*.swp
*~.nib
local.properties
.classpath
.settings/
.loadpath

slnx.sqlite-journal
slnx.sqlite
bin-Debug/
GCModeller-[Xx]64/
slnx.sqlite

# External tool builders
.externalToolBuilders/

# Locally stored "Eclipse launch configurations"
*.launch

# CDT-specific
.cproject

# PDT-specific
.buildpath

packages/

#################
## Visual Studio
#################

## Ignore Visual Studio temporary files, build results, and
## files generated by popular Visual Studio add-ons.

# User-specific files
*.suo
*.user
*.sln.docstates

# Build results

[Dd]ebug/
[Rr]elease/
x64/
build/
[Bb]in/
[Oo]bj/
.svn/

# MSTest test Results
[Tt]est[Rr]esult*/
[Bb]uild[Ll]og.*

*_i.c
*_p.c
*.ilk
*.meta
*.obj
*.pch
*.pdb
*.pgc
*.pgd
*.rsp
*.sbr
*.tlb
*.tli
*.tlh
*.tmp
*.tmp_proj
*.log
*.vspscc
*.vssscc
.builds
*.pidb
*.log
*.scc

# Visual C++ cache files
ipch/
*.aps
*.ncb
*.opensdf
*.sdf
*.cachefile

# Visual Studio profiler
*.psess
*.vsp
*.vspx

# Guidance Automation Toolkit
*.gpState

# ReSharper is a .NET coding add-in
_ReSharper*/
*.[Rr]e[Ss]harper

# TeamCity is a build add-in
_TeamCity*

# DotCover is a Code Coverage Tool
*.dotCover

# NCrunch
*.ncrunch*
.*crunch*.local.xml

# Installshield output folder
[Ee]xpress/

# DocProject is a documentation generator add-in
DocProject/buildhelp/
DocProject/Help/*.HxT
DocProject/Help/*.HxC
DocProject/Help/*.hhc
DocProject/Help/*.hhk
DocProject/Help/*.hhp
DocProject/Help/Html2
DocProject/Help/html

# Click-Once directory
publish/

# Publish Web Output
*.Publish.xml
*.pubxml
*.publishproj

# NuGet Packages Directory
## TODO: If you have NuGet Package Restore enabled, uncomment the next line
#packages/

# Windows Azure Build Output
csx
*.build.csdef

# Windows Store app package directory
AppPackages/

# Others
sql/
*.Cache
ClientBin/
[Ss]tyle[Cc]op.*
~$*
*~
*.dbmdl
*.[Pp]ublish.xml
*.pfx
*.publishsettings

# RIA/Silverlight projects
Generated_Code/

# Backup & report files from converting an old project file to a newer
# Visual Studio version. Backup files are not needed, because we have git ;-)
_UpgradeReport_Files/
Backup*/
UpgradeLog*.XML
UpgradeLog*.htm

# SQL Server files
App_Data/*.mdf
App_Data/*.ldf

#############
## Windows detritus
#############

# Windows image file caches
Thumbs.db
ehthumbs.db

# Folder config file
Desktop.ini

# Recycle Bin used on file shares
$RECYCLE.BIN/

# Mac crap
.DS_Store


#############
## Python
#############

*.py[cod]

# Packages
*.egg
*.egg-info
dist/
build/
eggs/
parts/
var/
sdist/
develop-eggs/
.installed.cfg

# Installer logs
pip-log.txt

# Unit test / coverage reports
.coverage
.tox

#Translations
*.mo

#Mr Developer
.mr.developer.cfg
/src/runtime/GCModeller/GCModeller
/src/runtime/httpd/httpd/ftp_publish
/.vs/GCModeller/v15
/src/.vs/GCModeller/v15/sqlite3/storage.ide
*.ide
/src/.vs/GCModeller/v15/sqlite3/storage.ide-journal
/src/.vs/GCModeller/v15
/src/.vs/GCModeller/v15/sqlite3
/src/.vs/GCModeller/v15/Server/sqlite3
/src/runtime/sciBASIC#/vs_solutions/installer/utils
/src/GCModeller/models/Networks/STRING/.vs/STRING/v15/Server/sqlite3
*.lock
*.ide-shm
*.ide-wal
/src/runtime/.vs/installer
/smartnucl_integrative/biodeepDB/METLINApp/App
/src/Assembly/ProteoWizard.d/App
*.dtbcache
/plot
/src/runtime/sciBASIC#/CLI_tools/Apps
/src/.vs/ProjectSettings.json
/.vs/GCModeller/v16/Preview
*.RData
/.vs/GCModeller/v16/Browse.VC.db
/.vs/GCModeller/v16/Browse.VC.opendb
/GCModeller/bin_unix64
src/workbench/R#/demo/kegg/kegg_maps.zip
/src/workbench/R#/demo/kegg/output
.Rproj.user
src/GCModeller/annotations/GSEA/PFSNet/PFSNet_1.0.0.1.tar.gz
GCModeller/Microsoft.VisualBasic.dll
src/workbench/R#/demo/cytoscape/automation/result.cys
src/workbench/R#/demo/cngb/bacterials.csv
*.db-wal
*.db-shm
*.dll
*.exe
src/repository/graphquery/kegg_graphquery_0.1.0.zip
src/workbench/GCModeller_1.1.0-beta.zip
src/repository/Bio.Repository/.vs/Bio.Repository/DesignTimeBuild/.dtbcache.v2
src/repository/Bio.Repository/.vs/repository/DesignTimeBuild/.dtbcache.v2
*.v2
src/GCModeller/analysis/PhenoGraph/Rphenograph_0.99.1.tar.gz
src/GCModeller/analysis/PhenoGraph/Rphenograph/src/jaccard_coeff.o
src/GCModeller/analysis/PhenoGraph/Rphenograph/src/RcppExports.o
src/GCModeller/analysis/PhenoGraph/Rphenograph.zip
*.v1
*.bin
src/runtime/Rnotebook_1.0.0.1254.tar.gz
src/interops/scripts/GCModeller_0.1.0.tar.gz
src/workbench/Markdown2PDF.zip
src/workbench/ggplot.zip
src/workbench/REnv.zip
*.vsidx
mzkit/App/Microsoft.VisualBasic.Framework_v47_dotnet_8da45dcd8060cc9a.xml
mzkit/App/Microsoft.VisualBasic.Framework_v47_dotnet_8da45dcd8060cc9a.dll.config
src/workbench/pkg/.pkg/GCModeller.NET5.zip
src/workbench/pkg/.pkg/GCModeller-net5.0.zip
src/repository/graphquery/kegg/.pkg/kegg_graphquery.zip
*.v3
src/workbench/Markdown2PDF_0.1.0.zip
*.v5
*.2
src/repository/graphquery/hsa.db
src/repository/graphquery/hsa.xml
src/repository/graphquery/kegg_mapping.json
src/workbench/R\#/.vs/ProjectEvaluation/packages.net5.projects.v6.1
src/workbench/R\#/.vs/ProjectEvaluation/packages.net5.metadata.v6.1
src/interops/RNA-Seq/.vs/ProjectEvaluation/rna-seq.data.net5.metadata.v6.1
src/interops/RNA-Seq/.vs/ProjectEvaluation/rna-seq.data.net5.projects.v6.1
src/GCModeller/annotations/GSEA/.vs/ProjectEvaluation/gsva.metadata.v6.1
src/GCModeller/annotations/GSEA/.vs/ProjectEvaluation/gsva.projects.v6.1
*.zip
src/runtime/enigma/src/.vs/ProjectEvaluation/enigma.metadata.v6.1
src/runtime/enigma/src/.vs/ProjectEvaluation/enigma.projects.v6.1
src/runtime/enigma/assembly/net48/enigma.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.Data.BinaryData.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.Data.Framework.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.Data.IO.MessagePack.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.DataMining.Framework.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.MachineLearning.XGBoost.DataSet.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.MachineLearning.XGBoost.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.MachineLearning.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.Math.Core.dll.config
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.Math.Core.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.Math.Lambda.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.MIME.application.xml.xml
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.Runtime.dll.config
src/runtime/enigma/assembly/net48/Microsoft.VisualBasic.Runtime.xml
src/runtime/enigma/assembly/net48/REnv.dll.config
src/runtime/enigma/assembly/net48/REnv.xml
src/runtime/enigma/assembly/net6.0-windows/enigma.deps.json
src/runtime/enigma/assembly/net6.0-windows/enigma.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.Data.BinaryData.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.Data.Framework.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.Data.IO.MessagePack.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.DataMining.Framework.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.MachineLearning.XGBoost.DataSet.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.MachineLearning.XGBoost.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.MachineLearning.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.Math.Core.dll.config
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.Math.Core.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.Math.Lambda.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.MIME.application.xml.xml
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.Runtime.dll.config
src/runtime/enigma/assembly/net6.0-windows/Microsoft.VisualBasic.Runtime.xml
src/runtime/enigma/assembly/net6.0-windows/REnv.dll.config
src/runtime/enigma/assembly/net6.0-windows/REnv.xml
src/runtime/enigma/assembly/net6.0/enigma.deps.json
src/runtime/enigma/assembly/net6.0/enigma.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.Data.BinaryData.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.Data.Framework.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.Data.IO.MessagePack.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.DataMining.Framework.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.DataStorage.HDSPack.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.MachineLearning.XGBoost.DataSet.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.MachineLearning.XGBoost.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.MachineLearning.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.Math.Core.dll.config
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.Math.Core.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.Math.Lambda.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.MIME.application.xml.xml
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.Runtime.dll.config
src/runtime/enigma/assembly/net6.0/Microsoft.VisualBasic.Runtime.xml
src/runtime/enigma/assembly/net6.0/REnv.dll.config
src/runtime/enigma/assembly/net6.0/REnv.xml
src/workbench/R\#/demo/HTS/GSVA/ath - Copy.db.mzpack

src/repository/graphquery/ko.db
src/GCModeller/annotations/GSEA/.vs/ProjectEvaluation/gsva.metadata.v6.1
src/GCModeller/annotations/GSEA/.vs/ProjectEvaluation/gsva.projects.v6.1

src/GCModeller/annotations/GSEA/.vs/ProjectEvaluation/fisher.net5.metadata.v6.1
src/GCModeller/annotations/GSEA/.vs/ProjectEvaluation/fisher.net5.projects.v6.1
src/GCModeller/annotations/GSEA/.vs/ProjectEvaluation/gsea.metadata.v6.1
src/GCModeller/annotations/GSEA/.vs/ProjectEvaluation/gsea.projects.v6.1
src/workbench/pkg/test/hsa_metpa.json
src/repository/Bio.Repository/.vs/ProjectEvaluation/repository.net5.metadata.v6.1
src/repository/Bio.Repository/.vs/ProjectEvaluation/repository.net5.projects.v6.1
src/repository/graphquery/kegg_reactions.db
src/repository/graphquery/kegg_maps.db
src/workbench/pkg/data/kegg/reactions.msgpack
src/workbench/pkg/data/kegg/compounds.msgpack
src/workbench/pkg/test/kegg_reactions.db
src/workbench/pkg/pipeline/KEGG_maps.pack
.vs/GCModeller/v17/.wsuo
src/GCModeller/analysis/Motifs/.vs/Motifs/v17/.wsuo
.vs/GCModeller/v17/Preview/Browse.VC.db
src/GCModeller/analysis/Motifs/MotifGraph/.vs/ProjectEvaluation/motifgraph.metadata.v6.1
src/GCModeller/analysis/Motifs/MotifGraph/.vs/ProjectEvaluation/motifgraph.projects.v6.1
msbuild/logs/R_system.NET5.sln.txt
msbuild/logs/Enigma.sln.txt
msbuild/logs/ggplot.NET5.sln.txt
msbuild/logs/packages.NET5.sln.txt
msbuild/logs/reportKit.NET5.sln.txt
src/workbench/R\#/demo/kegg/multiple_omics/associate_mt_KEGGMaps/map05165.png
src/workbench/R\#/demo/kegg/multiple_omics/associate_mt_KEGGMaps/map05165.html
src/workbench/R\#/demo/kegg/multiple_omics/associate_mt_KEGGMaps/map05162.png
src/workbench/R\#/demo/kegg/multiple_omics/associate_mt_KEGGMaps/map05162.html
src/workbench/R\#/demo/kegg/multiple_omics/associate_mt_KEGGMaps/map04974.png
src/workbench/R\#/demo/kegg/multiple_omics/associate_mt_KEGGMaps/map04974.html
/src/GCModeller/engine/Rscript/analysis/test.csv
src/repository/graphquery/kegg/tools/cache.db
src/workbench/pkg/test/ath_metpa.json
/src/repository/graphquery/kegg/test/kegg.msgpack

src/repository/graphquery/kegg/test/kegg_parts.msgpack

src/repository/graphquery/kegg/pipeline/package_updater/map_cache.db

src/workbench/pkg/.vs/pkg/v17/.wsuo
src/repository/graphquery/kegg/tools/kegg.db
src/workbench/pkg/test/compounds.msgpack
src/repository/graphquery/kegg/pipeline/package_updater/KEGG_maps.msgpack
src/workbench/pkg/test/reactions.msgpack